1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000006.1_cds_KAA8493487.1_4249

lcl|VRMN01000006.1_cds_KAA8493487.1_4249 (KAA8493487)


Aliases : KAA8493487

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000006.1_cds_KAA8493487.1_4249
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497479.1_6432 KAA8497479 Transposon Ty3-G Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497578.1_6531 KAA8497578 Transposon Ty3-I Gag-Pol polyprotein 0.2 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498182.1_7135 KAA8498182 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498183.1_7136 KAA8498183 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498184.1_7137 KAA8498184 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498457.1_7410 KAA8498457 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498878.1_7831 KAA8498878 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498879.1_7832 KAA8498879 Transposon Ty3-I Gag-Pol polyprotein 0.14 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495211.1_1209 KAA8495211 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495319.1_1317 KAA8495319 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495320.1_1318 KAA8495320 Retrotransposon-derived protein PEG10 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493461.1_9762 KAA8493461 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493085.1_2821 KAA8493085 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492702.1_9395 KAA8492702 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491014.1_9771 KAA8491014 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491004.1_6207 KAA8491004 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490791.1_5563 KAA8490791 Transposon Ty3-G Gag-Pol polyprotein 0.17 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490612.1_5711 KAA8490612 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490584.1_6057 KAA8490584 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490460.1_6406 KAA8490460 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490464.1_6410 KAA8490464 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490418.1_5041 KAA8490418 Transposon Ty3-G Gag-Pol polyprotein 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 599 667
IPR001584 Integrase_cat-core 1020 1129
IPR005162 Retrotrans_gag_dom 67 160
IPR001878 Znf_CCHC 232 247
IPR041373 RT_RNaseH 761 860
IPR041588 Integrase_H2C2 941 999
No external refs found!