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  5. lcl|VRMN01000006.1_cds_KAA8493470.1_4232

lcl|VRMN01000006.1_cds_KAA8493470.1_4232 (KAA8493470)


Aliases : KAA8493470

Description : Retrotransposon gag domain [Interproscan].


Gene families : OG_01_0003607 (OrthoFinder) Phylogenetic Tree(s): OG0003607_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000006.1_cds_KAA8493470.1_4232
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498188.1_7141 KAA8498188 Copia protein 0.16 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494621.1_3151 KAA8494621 Retrotransposon gag domain [Interproscan]. 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494625.1_3155 KAA8494625 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494228.1_4092 KAA8494228 Hypothetical protein 0.11 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493471.1_4233 KAA8493471 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.1 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493660.1_4422 KAA8493660 Copia protein 0.14 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491336.1_2337 KAA8491336 Copia protein 0.14 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491362.1_2363 KAA8491362 Copia protein 0.07 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491363.1_2364 KAA8491363 Retrotransposon gag domain [Interproscan]. 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 80 170
No external refs found!