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  5. lcl|VRMN01000005.1_cds_KAA8494333.1_4197

lcl|VRMN01000005.1_cds_KAA8494333.1_4197 (KAA8494333)


Aliases : KAA8494333

Description : General transcription factor IIH subunit 4


Gene families : OG_01_0003082 (OrthoFinder) Phylogenetic Tree(s): OG0003082_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000005.1_cds_KAA8494333.1_4197
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold9038.2 9038.2 Transcription factor TFIIH subunit p52/Tfb2 [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEA Interproscan
MF GO:0001671 ATPase activator activity IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006493 protein O-linked glycosylation IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
InterPro domains Description Start Stop
IPR004598 TFIIH_p52/Tfb2 22 404
IPR040662 Tfb2_C 417 484
No external refs found!