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  5. lcl|VRMN01000005.1_cds_KAA8494051.1_3915

lcl|VRMN01000005.1_cds_KAA8494051.1_3915 (KAA8494051)


Aliases : KAA8494051

Description : Actin


Gene families : OG_01_0000106 (OrthoFinder) Phylogenetic Tree(s): OG0000106_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000005.1_cds_KAA8494051.1_3915
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021350.36 tig00021350_g20654.t1 Cytoskeleton.microfilament network.actin filament protein 0.02 OrthoFinder
EOD18310 No alias Putative actin [Ensembl]. 0.01 OrthoFinder
EOD18507 No alias Actin/actin-related protein alternative [Ensembl]. 0.01 OrthoFinder
PTI_19G00520.1 No alias Actin family [Interproscan]. 0.02 OrthoFinder
PTI_19G00530.1 No alias Actin family [Interproscan]. 0.02 OrthoFinder
Sro61_g034960.1 Contig3112.g24749 Actin-66 (Fragment) 0.01 OrthoFinder
Sro762_g198640.1 Contig3620.g28005 Actin-66 (Fragment) 0.03 OrthoFinder
TP22G02480.1 No alias Actin family [Interproscan]. 0.03 OrthoFinder
XM_003061058.1 MicpuC2_49663, 49663 Actin, flagellar inner arm intermediate chain 0.03 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59601.1_6691 PRW59601 Actin 0.02 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20870.1_5108 PRW20870 Actin-related 4 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
CC GO:0009349 riboflavin synthase complex IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
InterPro domains Description Start Stop
IPR004000 Actin 3 373
No external refs found!