1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000005.1_cds_KAA8493898.1_3762

lcl|VRMN01000005.1_cds_KAA8493898.1_3762 (KAA8493898)


Aliases : KAA8493898

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000005.1_cds_KAA8493898.1_3762

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499404.1_8357 KAA8499404 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.17 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495820.1_1818 KAA8495820 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493298.1_9599 KAA8493298 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492723.1_2459 KAA8492723 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490383.1_3740 KAA8490383 Retrovirus-related Pol polyprotein from transposon 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 611 769
IPR001584 Integrase_cat-core 1122 1231
IPR005162 Retrotrans_gag_dom 118 211
IPR001878 Znf_CCHC 282 298
IPR041588 Integrase_H2C2 1043 1101
IPR041373 RT_RNaseH 863 962
No external refs found!