lcl|VRMN01000004.1_cds_KAA8495200.1_3730 (KAA8495200)


Aliases : KAA8495200

Description : Integrase, catalytic core; Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0004739 (OrthoFinder) Phylogenetic Tree(s): OG0004739_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8495200.1_3730
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499551.1_8504 KAA8499551 Integrase, catalytic core; Reverse transcriptase,... 0.1 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495816.1_1814 KAA8495816 Integrase, catalytic core [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493105.1_9406 KAA8493105 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491312.1_2313 KAA8491312 Hypothetical protein 0.2 OrthoFinder
lcl|VRMN01000025.1_cds_KAA8490490.1_2852 KAA8490490 Integrase, catalytic core; Reverse transcriptase,... 0.1 OrthoFinder
lcl|VRMN01000035.1_cds_KAA8490300.1_6221 KAA8490300 Integrase, catalytic core; Reverse transcriptase,... 0.2 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 1090 1296
IPR001584 Integrase_cat-core 772 882
No external refs found!