lcl|VRMN01000004.1_cds_KAA8495096.1_3626 (KAA8495096)


Aliases : KAA8495096

Description : CCR4-NOT transcription complex subunit 3


Gene families : OG_01_0002215 (OrthoFinder) Phylogenetic Tree(s): OG0002215_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8495096.1_3626
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
EOD26433 No alias NOT2/NOT3/NOT5, C-terminal; CCR4-Not complex component,... 0.02 OrthoFinder
Sro174_g076810.1 Contig4298.g32465 CCR4-NOT transcription complex subunit 3 0.01 OrthoFinder
Transcript_contig_55096 55096 CCR4-Not complex component, Not N-terminal domain [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR007207 Not_N 2 231
IPR007282 NOT2/3/5_C 563 680
No external refs found!