lcl|VRMN01000004.1_cds_KAA8495014.1_3544 (KAA8495014)


Aliases : KAA8495014

Description : 40S ribosomal protein S18


Gene families : OG_01_0002223 (OrthoFinder) Phylogenetic Tree(s): OG0002223_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8495014.1_3544
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Cre06.g272950 30778811, RPS18 Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 OrthoFinder
Cz03g21050.t1 No alias Ribosomal protein S13 [Interproscan]. 0.08 OrthoFinder
Dusal.0003s00026.1 33187489 Ribosomal protein S13 [Interproscan]. 0.08 OrthoFinder
EOD07550 No alias Ribosomal protein S13 [Interproscan]. 0.11 OrthoFinder
EOD24485 No alias Ribosomal protein S13 [Interproscan]. 0.11 OrthoFinder
OT_14G03080.1 No alias Ribosomal protein S13 [Interproscan]. 0.09 OrthoFinder
PTI_23G01020.1 No alias Ribosomal protein S13 [Interproscan]. 0.24 OrthoFinder
Sro2117_g315240.1 Contig3258.g25694 40S ribosomal protein S18 0.24 OrthoFinder
SymbC1.scaffold24401.1 24401.1 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
TP02G00280.1 No alias Ribosomal protein S13 [Interproscan]. 0.19 OrthoFinder
Vocar.0002s0337.1 32891179 Ribosomal protein S13 [Interproscan]. 0.08 OrthoFinder
XM_002505702.1 MICPUN_109369, 109369 Ribosomal protein S18 (RPS18) 0.19 OrthoFinder
XM_003063744.1 MicpuC2_49747, 49747 Ribosomal protein S18 (RPS18) 0.1 OrthoFinder
lcl|BLLF01000380.1_cds_GFH11172.1_5649 HaLaN_06628, GFH11172 Ribosomal protein S13 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56629.1_9755 PRW56629 40S ribosomal S18 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009094 L-phenylalanine biosynthetic process IEP Enrichment
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 15 143
No external refs found!