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  5. lcl|VRMN01000004.1_cds_KAA8494995.1_3525

lcl|VRMN01000004.1_cds_KAA8494995.1_3525 (KAA8494995)


Aliases : KAA8494995

Description : 50S ribosomal protein L3


Gene families : OG_01_0000938 (OrthoFinder) Phylogenetic Tree(s): OG0000938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494995.1_3525
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cre01.g022250 30789331, MRPL3 Protein biosynthesis.organelle translation... 0.01 OrthoFinder
Cre48.g761197 30778371 Protein biosynthesis.organelle translation... 0.02 OrthoFinder
Cz04g11050.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz04g11060.t1 No alias Ribosomal protein L3 [Interproscan]. 0.02 OrthoFinder
OT_02G04320.1 No alias Ribosomal protein L3 [Interproscan]. 0.02 OrthoFinder
Sro261_g101740.1 Contig3068.g24446 Protein L3 0.01 OrthoFinder
Sro51_chlor_g029470.1 Rpl3 Rpl3 0.02 OrthoFinder
TPCG02330.1 No alias Ribosomal protein L3 [Interproscan]. 0.01 OrthoFinder
Vocar.0006s0138.1 32894042 Ribosomal protein L3 [Interproscan]. 0.01 OrthoFinder
Vocar.0007s0251.1 32888145 Ribosomal protein L3 [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006476 protein deacetylation IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016575 histone deacetylation IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0035601 protein deacylation IEP Enrichment
MF GO:0051499 D-aminoacyl-tRNA deacylase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:0098732 macromolecule deacylation IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 163 248
No external refs found!