1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000004.1_cds_KAA8494982.1_3512

lcl|VRMN01000004.1_cds_KAA8494982.1_3512 (KAA8494982)


Aliases : KAA8494982

Description : Transposable element Tc3 transposase


Gene families : OG_01_0000753 (OrthoFinder) Phylogenetic Tree(s): OG0000753_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494982.1_3512
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497536.1_6489 KAA8497536 Transposable element Tc3 transposase 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497567.1_6520 KAA8497567 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497597.1_6550 KAA8497597 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498132.1_7085 KAA8498132 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498741.1_7694 KAA8498741 Transposable element Tc3 transposase 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499908.1_8861 KAA8499908 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496284.1_13 KAA8496284 Transposable element Tc3 transposase 0.17 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496322.1_51 KAA8496322 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495849.1_1847 KAA8495849 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495120.1_3650 KAA8495120 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495184.1_3714 KAA8495184 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493874.1_4636 KAA8493874 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493884.1_4646 KAA8493884 Transposable element Tc3 transposase 0.17 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492868.1_2604 KAA8492868 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491613.1_5081 KAA8491613 Transposable element Tc3 transposase 0.19 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491181.1_5809 KAA8491181 Transposable element Tc3 transposase 0.1 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491239.1_5867 KAA8491239 Tc3 transposase, DNA binding domain [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491240.1_5868 KAA8491240 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490780.1_6036 KAA8490780 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490539.1_5905 KAA8490539 Transposable element Tc3 transposase 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 146 295
IPR025898 Tc3_transposase_DNA-bd_dom 7 49
No external refs found!