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  5. lcl|VRMN01000004.1_cds_KAA8494891.1_3421

lcl|VRMN01000004.1_cds_KAA8494891.1_3421 (KAA8494891)


Aliases : KAA8494891

Description : Ubiquitin carboxyl-terminal hydrolase 22-A


Gene families : OG_01_0000131 (OrthoFinder) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494891.1_3421
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Cre06.g248950 30779501 Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz14g17060.t1 No alias Peptidase C19, ubiquitin carboxyl-terminal hydrolase... 0.02 OrthoFinder
OT_11G02070.1 No alias Peptidase C19, ubiquitin carboxyl-terminal hydrolase... 0.02 OrthoFinder
Sro399_g134800.1 Contig279.g3607 Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006000 fructose metabolic process IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0008915 lipid-A-disaccharide synthase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
MF GO:0009975 cyclase activity IEP Enrichment
MF GO:0009976 tocopherol cyclase activity IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 314 780
IPR001607 Znf_UBP 163 240
No external refs found!