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  5. lcl|VRMN01000004.1_cds_KAA8494867.1_3397

lcl|VRMN01000004.1_cds_KAA8494867.1_3397 (KAA8494867)


Aliases : KAA8494867

Description : Lupus La protein


Gene families : OG_01_0000377 (OrthoFinder) Phylogenetic Tree(s): OG0000377_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494867.1_3397
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000498.93 tig00000498_g1673.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00021589.16 tig00021589_g22722.t1 Serine/threonine-protein kinase Nek2 OS=Oryza sativa... 0.02 OrthoFinder
Cre10.g441200 30790096 RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder
Cre17.g724200 30781820, LAL1 La protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz06g07100.t1 No alias Hypothetical protein 0.02 OrthoFinder
Cz06g07110.t1 No alias La-type HTH domain [Interproscan]. 0.02 OrthoFinder
Cz13g03150.t1 No alias La protein, RNA-binding domain; RNA recognition motif... 0.09 OrthoFinder
EOD26743 No alias Protein of unknown function (DUF3223); La-type HTH... 0.03 OrthoFinder
OT_01G04880.1 No alias RNA recognition motif domain; La-type HTH domain [Interproscan]. 0.07 OrthoFinder
Transcript_contig_8474 8474 RNA recognition motif domain; La-type HTH domain [Interproscan]. 0.05 OrthoFinder
Vocar.0001s1267.1 32884310 La-type HTH domain [Interproscan]. 0.02 OrthoFinder
XM_003064255.1 MicpuC2_23416, 23416 La-type HTH domain [Interproscan]. 0.02 OrthoFinder
XM_003064256.1 MicpuC2_7758, 7758 Hypothetical protein 0.04 OrthoFinder
lcl|BLLF01000100.1_cds_GFH07526.1_2003 HaLaN_02341, GFH07526 HTH La-type RNA-binding domain-containing protein 0.02 OrthoFinder
lcl|BLLF01000849.1_cds_GFH15429.1_9906 HaLaN_11656, GFH15429 La-type HTH domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01003364.1_cds_GFH27142.1_21619 HaLaN_25415, GFH27142 RNA binding protein 0.06 OrthoFinder
lcl|BLLF01003838.1_cds_GFH28342.1_22819 HaLaN_26819, GFH28342 HTH La-type RNA-binding domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56866.1_9788 PRW56866 La-related 1A isoform X1 0.08 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45723.1_1269 PRW45723 La 1 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001932 regulation of protein phosphorylation IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0019008 molybdopterin synthase complex IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019900 kinase binding IEP Enrichment
MF GO:0019901 protein kinase binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042325 regulation of phosphorylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0043549 regulation of kinase activity IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0045859 regulation of protein kinase activity IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051338 regulation of transferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR014886 La_xRRM 291 396
IPR006630 La_HTH 18 73
No external refs found!