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  5. lcl|VRMN01000004.1_cds_KAA8494733.1_3263

lcl|VRMN01000004.1_cds_KAA8494733.1_3263 (KAA8494733)


Aliases : KAA8494733

Description : Retrovirus-related Pol polyprotein from transposon


Gene families : OG_01_0001103 (OrthoFinder) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494733.1_3263
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498413.1_7366 KAA8498413 Transposon Ty1-OR Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493429.1_9730 KAA8493429 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491013.1_9770 KAA8491013 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490720.1_5976 KAA8490720 Transposon Ty2-DR1 Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490783.1_6039 KAA8490783 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490613.1_5712 KAA8490613 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490614.1_5713 KAA8490614 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490624.1_5723 KAA8490624 Transposon Ty1-GR2 Gag-Pol polyprotein 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 468 686
No external refs found!