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  5. lcl|VRMN01000004.1_cds_KAA8494541.1_3071

lcl|VRMN01000004.1_cds_KAA8494541.1_3071 (KAA8494541)


Aliases : KAA8494541

Description : Retrotransposon gag domain; Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0002362 (OrthoFinder) Phylogenetic Tree(s): OG0002362_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494541.1_3071
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000010.1_cds_KAA8492323.1_5506 KAA8492323 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491000.1_6203 KAA8491000 Retrotransposon-derived protein PEG10 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 123 211
IPR001878 Znf_CCHC 285 301
No external refs found!