lcl|VRMN01000004.1_cds_KAA8494427.1_2957 (KAA8494427)

Aliases : KAA8494427

Description : Transposable element Tc3 transposase

Gene families : OG_01_0001332 (OrthoFinder) Phylogenetic Tree(s): OG0001332_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000004.1_cds_KAA8494427.1_2957
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497488.1_6441	KAA8497488	Transposable element Tcb2 transposase	0.02	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495318.1_1316	KAA8495318	Transposable element Tc1 transposase	0.08	OrthoFinder
lcl\|VRMN01000010.1_cds_KAA8492299.1_5482	KAA8492299	Transposable element Tcb2 transposase	0.18	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491909.1_4917	KAA8491909	Transposable element Tc3 transposase	0.22	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491408.1_2409	KAA8491408	Transposable element Tc1 transposase	0.08	OrthoFinder
lcl\|VRMN01000020.1_cds_KAA8490656.1_4698	KAA8490656	Transposable element Tc1 transposase	0.07	OrthoFinder
lcl\|VRMN01000029.1_cds_KAA8490404.1_6093	KAA8490404	Transposable element Tcb2 transposase	0.06	OrthoFinder
lcl\|VRMN01000031.1_cds_KAA8490361.1_5751	KAA8490361	Transposable element Tc1 transposase	0.05	OrthoFinder
lcl\|VRMN01000031.1_cds_KAA8490362.1_5752	KAA8490362	Transposable element Tc3 transposase	0.12	OrthoFinder
lcl\|VRMN01000038.1_cds_KAA8490259.1_2418	KAA8490259	Transposable element Tc3 transposase	0.13	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006313	transposition, DNA-mediated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0032196	transposition	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005524	ATP binding	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR024445	Tnp_ISXO2-like	92	206
IPR002492	Transposase_Tc1-like	293	360
IPR038717	Tc1-like_DDE_dom	428	485

External Links

No external refs found!