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  5. lcl|VRMN01000004.1_cds_KAA8494422.1_2952

lcl|VRMN01000004.1_cds_KAA8494422.1_2952 (KAA8494422)


Aliases : KAA8494422

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494422.1_2952
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497473.1_6426 KAA8497473 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498172.1_7125 KAA8498172 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499396.1_8349 KAA8499396 Transposon Ty3-G Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8500031.1_8984 KAA8500031 Transposon Tf2-6 polyprotein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496807.1_536 KAA8496807 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495847.1_1845 KAA8495847 Transposon Ty3-G Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496123.1_2121 KAA8496123 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494620.1_3150 KAA8494620 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494668.1_3198 KAA8494668 Transposon Ty3-I Gag-Pol polyprotein 0.14 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495183.1_3713 KAA8495183 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495185.1_3715 KAA8495185 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494005.1_3869 KAA8494005 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494327.1_4191 KAA8494327 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493427.1_9728 KAA8493427 Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492973.1_2709 KAA8492973 Transposon Ty3-G Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491607.1_5075 KAA8491607 Transposon Ty3-I Gag-Pol polyprotein 0.2 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491610.1_5078 KAA8491610 Retrovirus-related Pol polyprotein from transposon 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491611.1_5079 KAA8491611 Retrovirus-related Pol polyprotein from transposon 17.6 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491326.1_2327 KAA8491326 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491010.1_9767 KAA8491010 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490785.1_6041 KAA8490785 Transposon Ty3-G Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490537.1_5903 KAA8490537 Transposon Ty3-G Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490463.1_6409 KAA8490463 Transposon Ty3-G Gag-Pol polyprotein 0.01 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490242.1_5206 KAA8490242 Transposon Ty3-I Gag-Pol polyprotein 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 1120 1179
IPR000477 RT_dom 578 737
IPR001584 Integrase_cat-core 1195 1307
IPR041373 RT_RNaseH 849 952
No external refs found!