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  5. lcl|VRMN01000004.1_cds_KAA8494415.1_2945

lcl|VRMN01000004.1_cds_KAA8494415.1_2945 (KAA8494415)


Aliases : KAA8494415

Description : DNA repair protein complementing XP-C cells-like


Gene families : OG_01_0003839 (OrthoFinder) Phylogenetic Tree(s): OG0003839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494415.1_2945
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cz06g15180.t1 No alias Rad4 beta-hairpin domain 2; Rad4 beta-hairpin domain 3;... 0.02 OrthoFinder
Dusal.0110s00026.1 33194344 Rad4 beta-hairpin domain 3; Rad4 beta-hairpin domain 1;... 0.01 OrthoFinder
PTI_13G02730.1 No alias Rad4 beta-hairpin domain 1; Rad4 beta-hairpin domain 3;... 0.03 OrthoFinder
TP11G01060.1 No alias Rad4 beta-hairpin domain 1; Rad4 beta-hairpin domain 2... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032048 cardiolipin metabolic process IEP Enrichment
BP GO:0032049 cardiolipin biosynthetic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045017 glycerolipid biosynthetic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046471 phosphatidylglycerol metabolic process IEP Enrichment
BP GO:0046474 glycerophospholipid biosynthetic process IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
MF GO:0070567 cytidylyltransferase activity IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR018325 Rad4/PNGase_transGLS-fold 382 488
IPR018326 Rad4_beta-hairpin_dom1 518 574
IPR018328 Rad4_beta-hairpin_dom3 657 731
No external refs found!