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  5. lcl|VRMN01000004.1_cds_KAA8494373.1_2903

lcl|VRMN01000004.1_cds_KAA8494373.1_2903 (KAA8494373)


Aliases : KAA8494373

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0001103 (OrthoFinder) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494373.1_2903
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000005.1_cds_KAA8494243.1_4107 KAA8494243 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493479.1_4241 KAA8493479 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493483.1_4245 KAA8493483 Transposon Ty1-BL Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493209.1_9510 KAA8493209 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491399.1_2400 KAA8491399 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490783.1_6039 KAA8490783 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490614.1_5713 KAA8490614 Hypothetical protein 0.11 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 946 1147
No external refs found!