lcl|VRMN01000004.1_cds_KAA8494362.1_2892 (KAA8494362)

Aliases : KAA8494362

Description : Integrase, catalytic core; Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].

Gene families : OG_01_0004739 (OrthoFinder) Phylogenetic Tree(s): OG0004739_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000004.1_cds_KAA8494362.1_2892
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8499551.1_8504	KAA8499551	Integrase, catalytic core; Reverse transcriptase,...	0.04	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8494240.1_4104	KAA8494240	Copia protein	0.04	OrthoFinder
lcl\|VRMN01000025.1_cds_KAA8490490.1_2852	KAA8490490	Integrase, catalytic core; Reverse transcriptase,...	0.04	OrthoFinder
lcl\|VRMN01000035.1_cds_KAA8490300.1_6221	KAA8490300	Integrase, catalytic core; Reverse transcriptase,...	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
BP	GO:0006313	transposition, DNA-mediated	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
BP	GO:0032196	transposition	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	1090	1296
IPR001584	Integrase_cat-core	772	882

External Links

No external refs found!