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  5. lcl|VRMN01000004.1_cds_KAA8494361.1_2891

lcl|VRMN01000004.1_cds_KAA8494361.1_2891 (KAA8494361)


Aliases : KAA8494361

Description : Transposable element Tcb2 transposase


Gene families : OG_01_0001332 (OrthoFinder) Phylogenetic Tree(s): OG0001332_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494361.1_2891
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497488.1_6441 KAA8497488 Transposable element Tcb2 transposase 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495318.1_1316 KAA8495318 Transposable element Tc1 transposase 0.12 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493216.1_9517 KAA8493216 Transposable element Tc1 transposase 0.09 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492385.1_9078 KAA8492385 Transposable element Tc1 transposase 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491909.1_4917 KAA8491909 Transposable element Tc3 transposase 0.07 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491640.1_5108 KAA8491640 Transposable element Tc3 transposase 0.15 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491408.1_2409 KAA8491408 Transposable element Tc1 transposase 0.12 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490573.1_6046 KAA8490573 Transposable element Tc3 transposase 0.1 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490404.1_6093 KAA8490404 Transposable element Tcb2 transposase 0.05 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490361.1_5751 KAA8490361 Transposable element Tc1 transposase 0.08 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490362.1_5752 KAA8490362 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490259.1_2418 KAA8490259 Transposable element Tc3 transposase 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 157 311
No external refs found!