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  5. lcl|VRMN01000004.1_cds_KAA8494359.1_2889

lcl|VRMN01000004.1_cds_KAA8494359.1_2889 (KAA8494359)


Aliases : KAA8494359

Description : Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000004.1_cds_KAA8494359.1_2889
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499403.1_8356 KAA8499403 Reverse transcriptase domain [Interproscan]. 0.12 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496275.1_4 KAA8496275 Retrotransposable element 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497468.1_1197 KAA8497468 Reverse transcriptase domain [Interproscan]. 0.05 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496269.1_2267 KAA8496269 Retrotransposable element 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496271.1_2269 KAA8496271 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494360.1_2890 KAA8494360 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493457.1_9758 KAA8493457 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493103.1_2839 KAA8493103 Retrotransposable element 0.1 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492708.1_9401 KAA8492708 Copia protein 0.12 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490703.1_5959 KAA8490703 Retrotransposable element 0.21 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490413.1_5036 KAA8490413 Retrotransposable element 0.17 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490410.1_6099 KAA8490410 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490336.1_5678 KAA8490336 RNA-directed DNA polymerase from mobile element jockey 0.12 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490339.1_5681 KAA8490339 Retrotransposable element 0.16 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 KAA8490314 Retrotransposable element 0.07 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490258.1_2417 KAA8490258 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 KAA8490248 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490243.1_5207 KAA8490243 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490235.1_6102 KAA8490235 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490239.1_6106 KAA8490239 Hypothetical protein 0.19 OrthoFinder
lcl|VRMN01000043.1_cds_KAA8490234.1_2424 KAA8490234 Hypothetical protein 0.16 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490227.1_6079 KAA8490227 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 KAA8490228 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490219.1_4683 KAA8490219 Reverse transcriptase domain [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490222.1_4686 KAA8490222 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 KAA8490223 RNA-directed DNA polymerase from mobile element jockey 0.12 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490213.1_5698 KAA8490213 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490214.1_5699 KAA8490214 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000049.1_cds_KAA8490206.1_5939 KAA8490206 Hypothetical protein 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 517 594
No external refs found!