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  5. lcl|VRMN01000003.1_cds_KAA8496246.1_2244

lcl|VRMN01000003.1_cds_KAA8496246.1_2244 (KAA8496246)


Aliases : KAA8496246

Description : Copia protein


Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8496246.1_2244
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497813.1_6766 KAA8497813 Copia protein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497911.1_6864 KAA8497911 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498070.1_7023 KAA8498070 Copia protein 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498096.1_7049 KAA8498096 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498655.1_7608 KAA8498655 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496290.1_19 KAA8496290 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497458.1_1187 KAA8497458 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495231.1_1229 KAA8495231 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495709.1_1707 KAA8495709 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494534.1_3064 KAA8494534 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492724.1_2460 KAA8492724 Copia protein 0.05 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491889.1_4897 KAA8491889 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491900.1_4908 KAA8491900 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491987.1_4995 KAA8491987 Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491988.1_4996 KAA8491988 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491561.1_6371 KAA8491561 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491582.1_6392 KAA8491582 Copia protein 0.01 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491269.1_2270 KAA8491269 Putative mitochondrial protein 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491270.1_2271 KAA8491270 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491285.1_2286 KAA8491285 Copia protein 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491287.1_2288 KAA8491287 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490999.1_6202 KAA8490999 Copia protein 0.03 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490707.1_5963 KAA8490707 Copia protein 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004806 triglyceride lipase activity IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 123 211
IPR001584 Integrase_cat-core 526 621
IPR013103 RVT_2 928 1158
No external refs found!