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  5. lcl|VRMN01000003.1_cds_KAA8496158.1_2156

lcl|VRMN01000003.1_cds_KAA8496158.1_2156 (KAA8496158)


Aliases : KAA8496158

Description : 60S ribosomal protein L18-2


Gene families : OG_01_0003478 (OrthoFinder) Phylogenetic Tree(s): OG0003478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8496158.1_2156
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000142.18 tig00000142_g8653.t1 60S ribosomal protein L18 (Fragment) OS=Cicer arietinum 0.22 OrthoFinder
Cre12.g512600 30792347, RPL18 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder
Cz02g17120.t1 No alias Ribosomal protein L18e/L15P [Interproscan]. 0.11 OrthoFinder
Dusal.0152s00012.1 33186214 Ribosomal protein L18e/L15P [Interproscan]. 0.16 OrthoFinder
EOD35516 No alias Ribosomal protein L18e/L15P [Interproscan]. 0.09 OrthoFinder
OT_09G03130.1 No alias Ribosomal protein L18e/L15P [Interproscan]. 0.11 OrthoFinder
PTI_22G00610.1 No alias Ribosomal protein L18e/L15P [Interproscan]. 0.22 OrthoFinder
Sro84_g044900.1 Contig220.g2623 60S ribosomal protein L18 0.21 OrthoFinder
SymbC1.scaffold2696.1 2696.1 Ribosomal protein L18e/L15P [Interproscan]. 0.05 OrthoFinder
TP07G02970.1 No alias Ribosomal protein L18e/L15P [Interproscan]. 0.23 OrthoFinder
Vocar.0016s0167.1 32898010 Ribosomal protein L18e/L15P [Interproscan]. 0.04 OrthoFinder
XM_002506174.1 MICPUN_64167, 64167 Ribosomal protein L18 0.14 OrthoFinder
lcl|BLLF01000477.1_cds_GFH12201.1_6678 HaLaN_07840, GFH12201 Component of cytosolic 80S ribosome and 60S large subunit 0.02 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20417.1_5544 PRW20417 60S ribosomal L18-3 0.13 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006382 adenosine to inosine editing IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016553 base conversion or substitution editing IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR021131 Ribosomal_L18e/L15P 2 187
No external refs found!