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  5. lcl|VRMN01000003.1_cds_KAA8496139.1_2137

lcl|VRMN01000003.1_cds_KAA8496139.1_2137 (KAA8496139)


Aliases : KAA8496139

Description : Copia protein


Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8496139.1_2137
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497751.1_6704 KAA8497751 Copia protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499337.1_8290 KAA8499337 Copia protein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493322.1_9623 KAA8493322 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491269.1_2270 KAA8491269 Putative mitochondrial protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 918 1148
IPR001584 Integrase_cat-core 516 611
IPR005162 Retrotrans_gag_dom 123 211
No external refs found!