lcl|VRMN01000003.1_cds_KAA8496123.1_2121 (KAA8496123)

Aliases : KAA8496123

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000003.1_cds_KAA8496123.1_2121
Cluster	HCCA: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
Cz02g41150.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.03	OrthoFinder
Cz03g40130.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.03	OrthoFinder
Cz05g14160.t1	No alias	Retroviral aspartyl protease; Retrotransposon gag...	0.03	OrthoFinder
Cz06g11150.t1	No alias	Reverse transcriptase, RNase H-like domain; Integrase...	0.03	OrthoFinder
Cz11g01040.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.03	OrthoFinder
Cz15g18080.t1	No alias	Chromo domain [Interproscan].	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8497473.1_6426	KAA8497473	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494422.1_2952	KAA8494422	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494620.1_3150	KAA8494620	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495183.1_3713	KAA8495183	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495185.1_3715	KAA8495185	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000005.1_cds_KAA8494005.1_3869	KAA8494005	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491326.1_2327	KAA8491326	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490463.1_6409	KAA8490463	Transposon Ty3-G Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000041.1_cds_KAA8490242.1_5206	KAA8490242	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0008483	transaminase activity	IEP	Enrichment
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Enrichment
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Enrichment
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	578	737
IPR001584	Integrase_cat-core	1195	1307
IPR041588	Integrase_H2C2	1120	1179
IPR041373	RT_RNaseH	849	952

External Links

No external refs found!