1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000003.1_cds_KAA8496089.1_2087

lcl|VRMN01000003.1_cds_KAA8496089.1_2087 (KAA8496089)


Aliases : KAA8496089

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0000420 (OrthoFinder) Phylogenetic Tree(s): OG0000420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8496089.1_2087
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497516.1_6469 KAA8497516 Hypothetical protein 0.14 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497529.1_6482 KAA8497529 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498171.1_7124 KAA8498171 Copia protein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498455.1_7408 KAA8498455 gag-polyprotein putative aspartyl protease;... 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498719.1_7672 KAA8498719 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496418.1_147 KAA8496418 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.17 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494477.1_3007 KAA8494477 Copia protein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494496.1_3026 KAA8494496 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494322.1_4186 KAA8494322 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493138.1_9439 KAA8493138 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.18 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493353.1_9654 KAA8493353 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492969.1_2705 KAA8492969 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493086.1_2822 KAA8493086 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492392.1_9085 KAA8492392 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491347.1_2348 KAA8491347 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.17 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491349.1_2350 KAA8491349 Hypothetical protein 0.13 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491237.1_5865 KAA8491237 Copia protein 0.04 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491238.1_5866 KAA8491238 Integrase, catalytic core; Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491248.1_5876 KAA8491248 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491003.1_6206 KAA8491003 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.15 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490788.1_6044 KAA8490788 Retrotransposon gag domain [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490617.1_5716 KAA8490617 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.1 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490459.1_6405 KAA8490459 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490364.1_5754 KAA8490364 Hypothetical protein 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 170 258
IPR001584 Integrase_cat-core 646 753
No external refs found!