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  5. lcl|VRMN01000003.1_cds_KAA8495989.1_1987

lcl|VRMN01000003.1_cds_KAA8495989.1_1987 (KAA8495989)


Aliases : KAA8495989

Description : ATP-dependent DNA helicase 2 subunit 1


Gene families : OG_01_0003522 (OrthoFinder) Phylogenetic Tree(s): OG0003522_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495989.1_1987
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre13.g607500 30783931 DNA damage response.DNA repair mechanisms.nonhomologous... 0.02 OrthoFinder
lcl|BLLF01000828.1_cds_GFH15273.1_9750 HaLaN_11470, GFH15273 SAP domain-containing protein 0.02 OrthoFinder
lcl|BLLF01005025.1_cds_GFH30617.1_25094 HaLaN_29503, GFH30617 X-ray repair cross complementing 6 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003678 DNA helicase activity IEA Interproscan
BP GO:0006303 double-strand break repair via nonhomologous end joining IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0000439 transcription factor TFIIH core complex IEP Enrichment
MF GO:0001671 ATPase activator activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004651 polynucleotide 5'-phosphatase activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008047 enzyme activator activity IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0030173 integral component of Golgi membrane IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0031228 intrinsic component of Golgi membrane IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0098518 polynucleotide phosphatase activity IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
InterPro domains Description Start Stop
IPR003034 SAP_dom 647 680
IPR005161 Ku_N 60 271
IPR005160 Ku_C 538 628
IPR006164 Ku70/Ku80_beta-barrel_dom 312 488
No external refs found!