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  5. lcl|VRMN01000003.1_cds_KAA8495975.1_1973

lcl|VRMN01000003.1_cds_KAA8495975.1_1973 (KAA8495975)


Aliases : KAA8495975

Description : SWI/SNF and RSC complexes subunit ssr2


Gene families : OG_01_0003765 (OrthoFinder) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495975.1_1973
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Dusal.0235s00014.1 33189631 SMARCC, N-terminal [Interproscan]. 0.01 OrthoFinder
PTI_02G02500.1 No alias SWIRM domain; SMARCC, C-terminal [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004526 ribonuclease P activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0004651 polynucleotide 5'-phosphatase activity IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
CC GO:0030173 integral component of Golgi membrane IEP Enrichment
CC GO:0031228 intrinsic component of Golgi membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
MF GO:0098518 polynucleotide phosphatase activity IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
InterPro domains Description Start Stop
IPR000433 Znf_ZZ 904 941
IPR032450 SMARCC_N 102 469
IPR001005 SANT/Myb 963 1004
IPR032451 SMARCC_C 1152 1222
IPR007526 SWIRM 719 810
No external refs found!