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  5. lcl|VRMN01000003.1_cds_KAA8495926.1_1924

lcl|VRMN01000003.1_cds_KAA8495926.1_1924 (KAA8495926)


Aliases : KAA8495926

Description : 60S ribosomal protein L6


Gene families : OG_01_0002935 (OrthoFinder) Phylogenetic Tree(s): OG0002935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495926.1_1924
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021127.127 tig00021127_g18807.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder
Cre01.g011000 30788989, RPL6 Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder
Cz11g06080.t1 No alias 60S ribosomal protein L6E [Interproscan]. 0.17 OrthoFinder
Dusal.0521s00006.1 33197395 60S ribosomal protein L6E [Interproscan]. 0.31 OrthoFinder
OT_09G04060.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.13 OrthoFinder
PTI_04G05480.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.21 OrthoFinder
Sro189_g081570.1 Contig744.g8521 60S ribosomal protein L6 0.3 OrthoFinder
Sro68_g038220.1 Contig2027.g17403 60S ribosomal protein L6 0.22 OrthoFinder
SymbC1.scaffold2305.2 2305.2 60S ribosomal protein L6E [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold819.2 819.2 60S ribosomal protein L6E [Interproscan]. 0.03 OrthoFinder
Vocar.0013s0019.1 32896343 60S ribosomal protein L6E [Interproscan]. 0.05 OrthoFinder
XM_002504012.1 MICPUN_108678, 108678 60S ribosomal protein L6E [Interproscan]. 0.21 OrthoFinder
XM_003059548.1 MicpuC2_49628, 49628 60S ribosomal protein L6E [Interproscan]. 0.12 OrthoFinder
lcl|BLLF01001177.1_cds_GFH17624.1_12101 HaLaN_14295, GFH17624 Component of cytosolic 80S ribosome and 60S large subunit 0.03 OrthoFinder
lcl|BLLF01002839.1_cds_GFH25525.1_20002 HaLaN_23505, GFH25525 Component of cytosolic 80S ribosome and 60S large subunit 0.02 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57743.1_8428 PRW57743 60S ribosomal L6 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 68 176
No external refs found!