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  5. lcl|VRMN01000003.1_cds_KAA8495863.1_1861

lcl|VRMN01000003.1_cds_KAA8495863.1_1861 (KAA8495863)


Aliases : KAA8495863

Description : Histone H3


Gene families : OG_01_0000015 (OrthoFinder) Phylogenetic Tree(s): OG0000015_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495863.1_1861
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cre06.g265000 30778874 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre06.g265250 30779294 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre06.g266650 30779741 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre06.g274350 30778588, HTR29 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre06.g274850 30778497 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre06.g275750 30779137 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre12.g504650 30791932 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre12.g504800 30793536, HTR16 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre12.g505500 30793498, HTR17 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre12.g506300 30792290, HTR18 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre12.g506500 30792666, HTR35 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre13.g569950 30784075, HTR2 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre16.g649900 30777869, HTR40 Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder
Cre17.g708150 30782647, HTR36 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cre17.g709050 30782593, HTR3 Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder
Cz13g04210.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
Dusal.0428s00005.1 33197736 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD34125 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro228_g092790.1 Contig1235.g11593 Histone H3 0.01 OrthoFinder
Sro348_g123190.1 Contig2346.g19285 Histone H3 0.01 OrthoFinder
TP07G03200.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
TP07G03270.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57150.1_9065 PRW57150 Histone H3 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
CC GO:0009349 riboflavin synthase complex IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097020 COPII receptor activity IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!