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Aliases : KAA8495854
Description : U6 snRNA-associated Sm-like protein LSm6
Gene families : OG_01_0001195 (OrthoFinder) Phylogenetic Tree(s): OG0001195_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|VRMN01000003.1_cds_KAA8495854.1_1852 | |
| Cluster | HCCA: Cluster_70 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz06g33050.t1 | No alias | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder | |
| Sro25_g016910.1 | Contig1417.g13030 | Small nuclear ribonucleoprotein F | 0.02 | OrthoFinder | |
| Vocar.0019s0166.1 | 32892861 | LSM domain, eukaryotic/archaea-type [Interproscan]. | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000178 | exosome (RNase complex) | IEP | Enrichment |
| CC | GO:0000313 | organellar ribosome | IEP | Enrichment |
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Enrichment |
| MF | GO:0005319 | lipid transporter activity | IEP | Enrichment |
| CC | GO:0005739 | mitochondrion | IEP | Enrichment |
| CC | GO:0005761 | mitochondrial ribosome | IEP | Enrichment |
| BP | GO:0006284 | base-excision repair | IEP | Enrichment |
| BP | GO:0006869 | lipid transport | IEP | Enrichment |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Enrichment |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009143 | nucleoside triphosphate catabolic process | IEP | Enrichment |
| MF | GO:0016209 | antioxidant activity | IEP | Enrichment |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Enrichment |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Enrichment |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Enrichment |
| BP | GO:0034404 | nucleobase-containing small molecule biosynthetic process | IEP | Enrichment |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Enrichment |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Enrichment |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Enrichment |
| MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Enrichment |
| BP | GO:0061024 | membrane organization | IEP | Enrichment |
| BP | GO:0120009 | intermembrane lipid transfer | IEP | Enrichment |
| MF | GO:0120013 | lipid transfer activity | IEP | Enrichment |
| BP | GO:1901292 | nucleoside phosphate catabolic process | IEP | Enrichment |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Enrichment |
| CC | GO:1905354 | exoribonuclease complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 20 | 85 |
| No external refs found! |