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  5. lcl|VRMN01000003.1_cds_KAA8495846.1_1844

lcl|VRMN01000003.1_cds_KAA8495846.1_1844 (KAA8495846)


Aliases : KAA8495846

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495846.1_1844
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Cre01.g006402 30789026 No description available 0.02 OrthoFinder
Cz01g02130.t1 No alias Integrase zinc-binding domain [Interproscan]. 0.02 OrthoFinder
Cz01g02140.t1 No alias Chromo domain; Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
Cz07g09140.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz08g20010.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.01 OrthoFinder
Cz09g17100.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.01 OrthoFinder
Cz18g14030.t1 No alias Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000958.1_cds_GFH16187.1_10664 HaLaN_12562, GFH16187 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01005888.1_cds_GFH31734.1_26211 HaLaN_30835, GFH31734 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498183.1_7136 KAA8498183 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498720.1_7673 KAA8498720 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498876.1_7829 KAA8498876 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499550.1_8503 KAA8499550 Retrovirus-related Pol polyprotein from transposon 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499909.1_8862 KAA8499909 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495213.1_1211 KAA8495213 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495319.1_1317 KAA8495319 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495320.1_1318 KAA8495320 Retrotransposon-derived protein PEG10 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495820.1_1818 KAA8495820 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493085.1_2821 KAA8493085 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492702.1_9395 KAA8492702 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491827.1_4835 KAA8491827 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491585.1_5053 KAA8491585 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491590.1_5058 KAA8491590 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491407.1_2408 KAA8491407 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491014.1_9771 KAA8491014 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490791.1_5563 KAA8490791 Transposon Ty3-G Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490612.1_5711 KAA8490612 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490464.1_6410 KAA8490464 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 979 1037
IPR005162 Retrotrans_gag_dom 71 160
IPR001878 Znf_CCHC 231 247
IPR001584 Integrase_cat-core 1058 1167
IPR041373 RT_RNaseH 799 898
IPR000477 RT_dom 547 705
No external refs found!