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  5. lcl|VRMN01000003.1_cds_KAA8495592.1_1590

lcl|VRMN01000003.1_cds_KAA8495592.1_1590 (KAA8495592)


Aliases : KAA8495592

Description : 60S ribosomal protein L5


Gene families : OG_01_0002830 (OrthoFinder) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495592.1_1590
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.49 tig00000194_g14777.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder
Cre14.g621450 30776682, RPL5 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cz10g29210.t1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.03 OrthoFinder
Dusal.0029s00017.1 33203768 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.1 OrthoFinder
EOD29298 No alias Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.12 OrthoFinder
EOD40079 No alias Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal... 0.08 OrthoFinder
OT_15G01250.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.1 OrthoFinder
PTI_01G05820.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.15 OrthoFinder
Sro872_g213940.1 Contig2262.g18776 60S ribosomal protein L5 0.19 OrthoFinder
TP18G00890.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.1 OrthoFinder
Transcript_contig_79973 79973 Ribosomal protein L5 eukaryotic/L18 archaeal [Interproscan]. 0.01 OrthoFinder
XM_002501895.1 MICPUN_108173, 108173 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.17 OrthoFinder
XM_003057549.1 MicpuC2_49536, 49536 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.07 OrthoFinder
lcl|BLLF01000001.1_cds_GFH05536.1_13 HaLaN_00015, GFH05536 Ribosomal_L18_c domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0008097 5S rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
InterPro domains Description Start Stop
IPR005485 Rbsml_L5_euk/L18_arc 11 172
IPR025607 Rbsml_L5e/L18P_C 187 278
No external refs found!