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  5. lcl|VRMN01000003.1_cds_KAA8495591.1_1589

lcl|VRMN01000003.1_cds_KAA8495591.1_1589 (KAA8495591)


Aliases : KAA8495591

Description : 40S ribosomal protein S13


Gene families : OG_01_0003390 (OrthoFinder) Phylogenetic Tree(s): OG0003390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495591.1_1589
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000489.15 tig00000489_g1374.t1 40S ribosomal protein S13 OS=Glycine max 0.08 OrthoFinder
Cre07.g331900 30774339, RPS13 Protein biosynthesis.cytosolic ribosome.small subunit... 0.33 OrthoFinder
Cz07g16040.t1 No alias Ribosomal protein S15 [Interproscan]. 0.16 OrthoFinder
Dusal.0017s00026.1 33200512 Ribosomal protein S15; Ribosomal protein S13/S15,... 0.19 OrthoFinder
EOD30715 No alias Ribosomal protein S15; Ribosomal protein S13/S15,... 0.1 OrthoFinder
EOD34926 No alias 40S ribosomal protein S13 [Ensembl]. 0.1 OrthoFinder
OT_01G03170.1 No alias Ribosomal protein S13/S15, N-terminal; Ribosomal protein... 0.21 OrthoFinder
PTI_01G02690.1 No alias Ribosomal protein S13/S15, N-terminal; Ribosomal protein... 0.19 OrthoFinder
Sro611_g175300.1 Contig1882.g16411 40S ribosomal protein S13 0.25 OrthoFinder
SymbC1.scaffold2720.1 2720.1 Glycosyltransferase, DXD sugar-binding motif; Ribosomal... 0.02 OrthoFinder
TP04G08460.1 No alias Ribosomal protein S15; Ribosomal protein S13/S15,... 0.18 OrthoFinder
XM_002504263.1 MICPUN_108906, 108906 Ribosomal protein S15; Ribosomal protein S13/S15,... 0.23 OrthoFinder
XM_003063730.1 MicpuC2_49744, 49744 Ribosomal protein S13/S15, N-terminal; Ribosomal protein... 0.07 OrthoFinder
lcl|BLLF01005706.1_cds_GFH31540.1_26017 HaLaN_30603, GFH31540 Ribosomal_S13_N domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56017.1_9996 PRW56017 40S ribosomal S13 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 75 144
IPR012606 Ribosomal_S13/S15_N 1 60
No external refs found!