1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000003.1_cds_KAA8495540.1_1538

lcl|VRMN01000003.1_cds_KAA8495540.1_1538 (KAA8495540)


Aliases : KAA8495540

Description : DExH-box ATP-dependent RNA helicase DExH15 chloroplastic


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495540.1_1538
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020723.108 tig00020723_g13518.t1 RNA processing.RNA decay.exosome complex.associated... 0.01 OrthoFinder
EOD08792 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.01 OrthoFinder
TP06G02960.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.01 OrthoFinder
XM_003056641.1 MicpuC2_32119, 32119 rRNA-processing arch domain; ATP-dependent RNA helicase... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004555 alpha,alpha-trehalase activity IEP Enrichment
MF GO:0004659 prenyltransferase activity IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
MF GO:0008318 protein prenyltransferase activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
MF GO:0015927 trehalase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
BP GO:0018342 protein prenylation IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
CC GO:0031011 Ino80 complex IEP Enrichment
CC GO:0033202 DNA helicase complex IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
CC GO:0070603 SWI/SNF superfamily-type complex IEP Enrichment
CC GO:0090730 Las1 complex IEP Enrichment
CC GO:0097346 INO80-type complex IEP Enrichment
BP GO:0097354 prenylation IEP Enrichment
CC GO:1902555 endoribonuclease complex IEP Enrichment
CC GO:1902911 protein kinase complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
InterPro domains Description Start Stop
IPR012961 Ski2_C 992 1155
IPR011545 DEAD/DEAH_box_helicase_dom 155 315
IPR001650 Helicase_C 528 606
No external refs found!