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  5. lcl|VRMN01000003.1_cds_KAA8495362.1_1360

lcl|VRMN01000003.1_cds_KAA8495362.1_1360 (KAA8495362)


Aliases : KAA8495362

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0003588 (OrthoFinder) Phylogenetic Tree(s): OG0003588_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495362.1_1360
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000002.1_cds_KAA8496915.1_644 KAA8496915 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492298.1_5481 KAA8492298 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491006.1_6209 KAA8491006 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490462.1_6408 KAA8490462 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023780 Chromo_domain 1136 1183
IPR001584 Integrase_cat-core 838 948
IPR000477 RT_dom 290 450
IPR041588 Integrase_H2C2 763 822
IPR041373 RT_RNaseH 562 662
No external refs found!