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  5. lcl|VRMN01000003.1_cds_KAA8495327.1_1325

lcl|VRMN01000003.1_cds_KAA8495327.1_1325 (KAA8495327)


Aliases : KAA8495327

Description : Squalene synthase


Gene families : OG_01_0000364 (OrthoFinder) Phylogenetic Tree(s): OG0000364_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495327.1_1325
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cz03g02150.t1 No alias NUDIX hydrolase domain [Interproscan]. 0.03 OrthoFinder
Cz09g12120.t1 No alias Aldose 1-/Glucose-6-phosphate 1-epimerase [Interproscan]. 0.02 OrthoFinder
Sro2_g001860.1 Contig467.g6344 Inactive squalene synthase 2 0.02 OrthoFinder
TP01G00380.1 No alias NUDIX hydrolase domain [Interproscan]. 0.02 OrthoFinder
Vocar.0015s0195.1 32898856 Squalene/phytoene synthase [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001412.1_cds_GFH19142.1_13619 HaLaN_16045, GFH19142 Galactose mutarotase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0005548 phospholipid transporter activity IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015914 phospholipid transport IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment

No InterPro domains available for this sequence

No external refs found!