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  5. lcl|VRMN01000003.1_cds_KAA8495320.1_1318

lcl|VRMN01000003.1_cds_KAA8495320.1_1318 (KAA8495320)


Aliases : KAA8495320

Description : Retrotransposon-derived protein PEG10


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000003.1_cds_KAA8495320.1_1318
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Cre01.g006402 30789026 No description available 0.02 OrthoFinder
Cz01g02130.t1 No alias Integrase zinc-binding domain [Interproscan]. 0.02 OrthoFinder
Cz01g02140.t1 No alias Chromo domain; Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
Cz07g09140.t1 No alias Hypothetical protein 0.04 OrthoFinder
Cz08g20010.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.01 OrthoFinder
Cz09g17100.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.01 OrthoFinder
Cz18g14030.t1 No alias Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000958.1_cds_GFH16187.1_10664 HaLaN_12562, GFH16187 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01005888.1_cds_GFH31734.1_26211 HaLaN_30835, GFH31734 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498182.1_7135 KAA8498182 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498720.1_7673 KAA8498720 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498876.1_7829 KAA8498876 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498877.1_7830 KAA8498877 Transposon Ty3-G Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498878.1_7831 KAA8498878 Transposon Ty3-I Gag-Pol polyprotein 0.15 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498879.1_7832 KAA8498879 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495213.1_1211 KAA8495213 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495319.1_1317 KAA8495319 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495820.1_1818 KAA8495820 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495846.1_1844 KAA8495846 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493487.1_4249 KAA8493487 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493085.1_2821 KAA8493085 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491827.1_4835 KAA8491827 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491585.1_5053 KAA8491585 Transposon Ty3-I Gag-Pol polyprotein 0.14 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491590.1_5058 KAA8491590 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491407.1_2408 KAA8491407 Transposon Ty3-I Gag-Pol polyprotein 0.22 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491004.1_6207 KAA8491004 Hypothetical protein 0.18 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490791.1_5563 KAA8490791 Transposon Ty3-G Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490612.1_5711 KAA8490612 Transposon Ty3-I Gag-Pol polyprotein 0.18 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490521.1_4671 KAA8490521 Transposon Ty3-I Gag-Pol polyprotein 0.14 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490460.1_6406 KAA8490460 Hypothetical protein 0.18 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490384.1_3741 KAA8490384 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 231 247
IPR005162 Retrotrans_gag_dom 67 160
No external refs found!