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Aliases : KAA8495286
Description : Splicing factor U2AF 50 kDa subunit
Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|VRMN01000003.1_cds_KAA8495286.1_1284 | |
| Cluster | HCCA: Cluster_78 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre04.g216650 | 30791026 | No description available | 0.02 | OrthoFinder | |
| Cz04g00020.t1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0862s00006.1 | 33191519 | Hypothetical protein | 0.02 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW56919.1_8884 | PRW56919 | Splicing factor U2af large subunit A-like isoform X1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Enrichment |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Enrichment |
| BP | GO:0002949 | tRNA threonylcarbamoyladenosine modification | IEP | Enrichment |
| MF | GO:0004408 | holocytochrome-c synthase activity | IEP | Enrichment |
| MF | GO:0004651 | polynucleotide 5'-phosphatase activity | IEP | Enrichment |
| CC | GO:0005739 | mitochondrion | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006401 | RNA catabolic process | IEP | Enrichment |
| BP | GO:0006402 | mRNA catabolic process | IEP | Enrichment |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Enrichment |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| MF | GO:0016846 | carbon-sulfur lyase activity | IEP | Enrichment |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Enrichment |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Enrichment |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Enrichment |
| BP | GO:0048519 | negative regulation of biological process | IEP | Enrichment |
| BP | GO:0070525 | tRNA threonylcarbamoyladenosine metabolic process | IEP | Enrichment |
| MF | GO:0098518 | polynucleotide phosphatase activity | IEP | Enrichment |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Enrichment |
| No external refs found! |