lcl|VRMN01000003.1_cds_KAA8495213.1_1211 (KAA8495213)

Aliases : KAA8495213

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000003.1_cds_KAA8495213.1_1211
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
Cz07g09140.t1	No alias	Hypothetical protein	0.02	OrthoFinder
Cz18g14030.t1	No alias	Reverse transcriptase domain [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01000958.1_cds_GFH16187.1_10664	HaLaN_12562, GFH16187	Hypothetical protein	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8497670.1_6623	KAA8497670	Transposon Ty3-I Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498182.1_7135	KAA8498182	Hypothetical protein	0.04	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498183.1_7136	KAA8498183	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498184.1_7137	KAA8498184	Transposon Ty3-I Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498457.1_7410	KAA8498457	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498720.1_7673	KAA8498720	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498877.1_7830	KAA8498877	Transposon Ty3-G Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498878.1_7831	KAA8498878	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499404.1_8357	KAA8499404	Transposon Ty3-I Gag-Pol polyprotein	0.09	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499405.1_8358	KAA8499405	Retrotransposon-derived protein PEG10	0.03	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499550.1_8503	KAA8499550	Retrovirus-related Pol polyprotein from transposon	0.06	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499909.1_8862	KAA8499909	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8497383.1_1112	KAA8497383	Transposon Ty3-I Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495319.1_1317	KAA8495319	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495320.1_1318	KAA8495320	Retrotransposon-derived protein PEG10	0.05	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495820.1_1818	KAA8495820	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495846.1_1844	KAA8495846	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494624.1_3154	KAA8494624	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494670.1_3200	KAA8494670	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494765.1_3295	KAA8494765	Transposon Ty3-I Gag-Pol polyprotein	0.11	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493809.1_4571	KAA8493809	Transposon Ty3-I Gag-Pol polyprotein	0.09	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493854.1_4616	KAA8493854	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493298.1_9599	KAA8493298	Transposon Ty3-I Gag-Pol polyprotein	0.09	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493461.1_9762	KAA8493461	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000008.1_cds_KAA8493085.1_2821	KAA8493085	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000009.1_cds_KAA8492702.1_9395	KAA8492702	Transposon Ty3-I Gag-Pol polyprotein	0.06	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491585.1_5053	KAA8491585	Transposon Ty3-I Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000012.1_cds_KAA8491590.1_5058	KAA8491590	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491407.1_2408	KAA8491407	Transposon Ty3-I Gag-Pol polyprotein	0.09	OrthoFinder
lcl\|VRMN01000016.1_cds_KAA8491014.1_9771	KAA8491014	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000017.1_cds_KAA8491004.1_6207	KAA8491004	Hypothetical protein	0.04	OrthoFinder
lcl\|VRMN01000018.1_cds_KAA8490791.1_5563	KAA8490791	Transposon Ty3-G Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000021.1_cds_KAA8490612.1_5711	KAA8490612	Transposon Ty3-I Gag-Pol polyprotein	0.05	OrthoFinder
lcl\|VRMN01000023.1_cds_KAA8490532.1_5898	KAA8490532	Transposon Ty3-I Gag-Pol polyprotein	0.04	OrthoFinder
lcl\|VRMN01000024.1_cds_KAA8490521.1_4671	KAA8490521	Transposon Ty3-I Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490460.1_6406	KAA8490460	Hypothetical protein	0.04	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490464.1_6410	KAA8490464	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000028.1_cds_KAA8490418.1_5041	KAA8490418	Transposon Ty3-G Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000030.1_cds_KAA8490384.1_3741	KAA8490384	Transposon Ty3-I Gag-Pol polyprotein	0.03	OrthoFinder
lcl\|VRMN01000030.1_cds_KAA8490385.1_3742	KAA8490385	Transposon Ty3-G Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000041.1_cds_KAA8490241.1_5205	KAA8490241	Transposon Ty3-I Gag-Pol polyprotein	0.01	OrthoFinder
lcl\|VRMN01000042.1_cds_KAA8490236.1_6103	KAA8490236	Transposon Ty3-G Gag-Pol polyprotein	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004806	triglyceride lipase activity	IEP	Enrichment
BP	GO:0009092	homoserine metabolic process	IEP	Enrichment
MF	GO:0016298	lipase activity	IEP	Enrichment
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Enrichment
BP	GO:0019346	transsulfuration	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0030170	pyridoxal phosphate binding	IEP	Enrichment
BP	GO:0050667	homocysteine metabolic process	IEP	Enrichment
MF	GO:0070279	vitamin B6 binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041373	RT_RNaseH	827	926
IPR041588	Integrase_H2C2	1007	1065
IPR000477	RT_dom	575	733
IPR001878	Znf_CCHC	231	247
IPR005162	Retrotrans_gag_dom	67	160
IPR001584	Integrase_cat-core	1086	1195

External Links

No external refs found!

lcl|VRMN01000003.1_cds_KAA8495213.1_1211 (KAA8495213)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation