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  5. lcl|VRMN01000002.1_cds_KAA8497384.1_1113

lcl|VRMN01000002.1_cds_KAA8497384.1_1113 (KAA8497384)


Aliases : KAA8497384

Description : Retrotransposon gag domain [Interproscan].


Gene families : OG_01_0000420 (OrthoFinder) Phylogenetic Tree(s): OG0000420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497384.1_1113

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497529.1_6482 KAA8497529 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498171.1_7124 KAA8498171 Copia protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498455.1_7408 KAA8498455 gag-polyprotein putative aspartyl protease;... 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496418.1_147 KAA8496418 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.14 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494477.1_3007 KAA8494477 Copia protein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493353.1_9654 KAA8493353 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492969.1_2705 KAA8492969 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491348.1_2349 KAA8491348 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491195.1_5823 KAA8491195 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.14 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491237.1_5865 KAA8491237 Copia protein 0.02 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491238.1_5866 KAA8491238 Integrase, catalytic core; Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491248.1_5876 KAA8491248 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490364.1_5754 KAA8490364 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 170 258
No external refs found!