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  5. lcl|VRMN01000002.1_cds_KAA8497382.1_1111

lcl|VRMN01000002.1_cds_KAA8497382.1_1111 (KAA8497382)


Aliases : KAA8497382

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0005627 (OrthoFinder) Phylogenetic Tree(s): OG0005627_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497382.1_1111

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497499.1_6452 KAA8497499 Zinc finger, CCHC-type [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498173.1_7126 KAA8498173 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499397.1_8350 KAA8499397 Hypothetical protein 0.12 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495795.1_1793 KAA8495795 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495818.1_1816 KAA8495818 Zinc finger, CCHC-type [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495848.1_1846 KAA8495848 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494328.1_4192 KAA8494328 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492974.1_2710 KAA8492974 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491603.1_5071 KAA8491603 Zinc finger, CCHC-type [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490786.1_6042 KAA8490786 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490536.1_5902 KAA8490536 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 334 349
No external refs found!