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  5. lcl|VRMN01000002.1_cds_KAA8497326.1_1055

lcl|VRMN01000002.1_cds_KAA8497326.1_1055 (KAA8497326)


Aliases : KAA8497326

Description : Ribosome biogenesis protein NSA2-like


Gene families : OG_01_0004536 (OrthoFinder) Phylogenetic Tree(s): OG0004536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497326.1_1055
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.38 tig00000944_g5960.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
EOD09645 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.02 OrthoFinder
OT_17G02370.1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.09 OrthoFinder
PTI_08G03640.1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.08 OrthoFinder
Sro1010_g230920.1 Contig4560.g34057 Ribosome biogenesis protein NSA2 homolog 0.07 OrthoFinder
TP06G05960.1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.07 OrthoFinder
XM_002504902.1 MICPUN_62565, 62565 Ribosomal protein S8E 0.04 OrthoFinder
XM_003060620.1 MicpuC2_44560, 44560 Ribosomal protein S8e 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0019008 molybdopterin synthase complex IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 37 264
No external refs found!