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  5. lcl|VRMN01000002.1_cds_KAA8497175.1_904

lcl|VRMN01000002.1_cds_KAA8497175.1_904 (KAA8497175)


Aliases : KAA8497175

Description : Ribosome production factor 2-like


Gene families : OG_01_0002998 (OrthoFinder) Phylogenetic Tree(s): OG0002998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497175.1_904
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.36 tig00001003_g6291.t1 Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.04 OrthoFinder
Cre03.g197000 30787867 Ribosome production factor 2 homolog OS=Arabidopsis thaliana 0.05 OrthoFinder
Cz01g37260.t1 No alias Brix domain [Interproscan]. 0.08 OrthoFinder
Dusal.0095s00009.1 33190289 Brix domain [Interproscan]. 0.02 OrthoFinder
EOD23498 No alias Brix domain [Interproscan]. 0.02 OrthoFinder
EOD30893 No alias Brix domain [Interproscan]. 0.04 OrthoFinder
OT_17G01690.1 No alias Brix domain [Interproscan]. 0.08 OrthoFinder
PTI_06G01690.1 No alias Brix domain [Interproscan]. 0.06 OrthoFinder
Sro545_g163870.1 Contig1180.g11230 Production factor 2 homolog 0.09 OrthoFinder
TP03G03260.1 No alias Brix domain [Interproscan]. 0.04 OrthoFinder
Transcript_contig_82014 82014 Brix domain [Interproscan]. 0.06 OrthoFinder
Vocar.0011s0309.1 32895454 Brix domain [Interproscan]. 0.02 OrthoFinder
XM_002506064.1 MICPUN_70830, 70830 Brix domain [Interproscan]. 0.07 OrthoFinder
XM_003056730.1 MicpuC2_5469, 5469 Brix domain [Interproscan]. 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007109 Brix 60 267
No external refs found!