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  5. lcl|VRMN01000002.1_cds_KAA8497003.1_732

lcl|VRMN01000002.1_cds_KAA8497003.1_732 (KAA8497003)


Aliases : KAA8497003

Description : Copia protein


Gene families : OG_01_0002023 (OrthoFinder) Phylogenetic Tree(s): OG0002023_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8497003.1_732
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499408.1_8361 KAA8499408 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.12 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497005.1_734 KAA8497005 Integrase, catalytic core; gag-polyprotein putative... 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494833.1_3363 KAA8494833 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494875.1_3405 KAA8494875 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494877.1_3407 KAA8494877 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494878.1_3408 KAA8494878 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.12 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492110.1_5293 KAA8492110 Hypothetical protein 0.18 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491359.1_2360 KAA8491359 Copia protein 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 4 158
No external refs found!