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  5. lcl|VRMN01000002.1_cds_KAA8496969.1_698

lcl|VRMN01000002.1_cds_KAA8496969.1_698 (KAA8496969)


Aliases : KAA8496969

Description : 30S ribosomal protein S1


Gene families : OG_01_0000672 (OrthoFinder) Phylogenetic Tree(s): OG0000672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496969.1_698
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.13 tig00000241_g20872.t1 Protein biosynthesis.organelle translation... 0.02 OrthoFinder
Cre09.g394750 30780657, PRPS1 Protein biosynthesis.organelle translation... 0.03 OrthoFinder
Cz02g16010.t1 No alias S1 domain [Interproscan]. 0.02 OrthoFinder
EOD04413 No alias S1 domain [Interproscan]. 0.02 OrthoFinder
EOD22273 No alias S1 domain [Interproscan]. 0.03 OrthoFinder
OT_02G04440.1 No alias S1 domain [Interproscan]. 0.02 OrthoFinder
Sro411_g137640.1 Contig243.g2970 30S Ribosomal protein S1 0.02 OrthoFinder
Sro581_g170300.1 Contig2661.g21535 30S Ribosomal protein S1 0.02 OrthoFinder
TP02G03130.1 No alias S1 domain [Interproscan]. 0.02 OrthoFinder
XM_002505003.1 MICPUN_95520, 95520 S1 domain [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51070.1_1026 PRW51070 30S ribosomal chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003029 S1_domain 68 139
IPR003029 S1_domain 176 245
No external refs found!