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  5. lcl|VRMN01000002.1_cds_KAA8496418.1_147

lcl|VRMN01000002.1_cds_KAA8496418.1_147 (KAA8496418)


Aliases : KAA8496418

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0000420 (OrthoFinder) Phylogenetic Tree(s): OG0000420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496418.1_147
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497516.1_6469 KAA8497516 Hypothetical protein 0.17 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497529.1_6482 KAA8497529 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498171.1_7124 KAA8498171 Copia protein 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498455.1_7408 KAA8498455 gag-polyprotein putative aspartyl protease;... 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498719.1_7672 KAA8498719 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.1 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497384.1_1113 KAA8497384 Retrotransposon gag domain [Interproscan]. 0.14 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496089.1_2087 KAA8496089 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.17 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494477.1_3007 KAA8494477 Copia protein 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494496.1_3026 KAA8494496 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493138.1_9439 KAA8493138 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.22 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493392.1_9693 KAA8493392 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492969.1_2705 KAA8492969 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493086.1_2822 KAA8493086 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493090.1_2826 KAA8493090 Retrotransposon gag domain [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492392.1_9085 KAA8492392 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.14 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491347.1_2348 KAA8491347 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.19 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491348.1_2349 KAA8491348 Hypothetical protein 0.15 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491349.1_2350 KAA8491349 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491195.1_5823 KAA8491195 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.09 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491237.1_5865 KAA8491237 Copia protein 0.06 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491238.1_5866 KAA8491238 Integrase, catalytic core; Zinc finger, CCHC-type [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491248.1_5876 KAA8491248 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491003.1_6206 KAA8491003 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490788.1_6044 KAA8490788 Retrotransposon gag domain [Interproscan]. 0.05 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490364.1_5754 KAA8490364 Hypothetical protein 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 336 352
IPR005162 Retrotrans_gag_dom 159 243
No external refs found!