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  5. lcl|VRMN01000002.1_cds_KAA8496335.1_64

lcl|VRMN01000002.1_cds_KAA8496335.1_64 (KAA8496335)


Aliases : KAA8496335

Description : Dual-specificity RNA methyltransferase RlmN


Gene families : OG_01_0000198 (OrthoFinder) Phylogenetic Tree(s): OG0000198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496335.1_64
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.127 tig00000113_g5708.t1 No description available 0.01 OrthoFinder
Cre01.g028450 30788447 No description available 0.06 OrthoFinder
Cre01.g043000 30789590 No description available 0.03 OrthoFinder
Cre02.g109250 30785491 No description available 0.04 OrthoFinder
Cz04g21170.t1 No alias 4Fe-4S single cluster domain; Radical SAM [Interproscan]. 0.01 OrthoFinder
Cz10g12170.t1 No alias Hypothetical protein 0.03 OrthoFinder
OT_01G01400.1 No alias Radical SAM [Interproscan]. 0.12 OrthoFinder
OT_03G05110.1 No alias Radical SAM [Interproscan]. 0.03 OrthoFinder
OT_12G02200.1 No alias 4Fe-4S single cluster domain; Radical SAM [Interproscan]. 0.03 OrthoFinder
PTI_08G00750.1 No alias Radical SAM [Interproscan]. 0.04 OrthoFinder
Sro288_g108800.1 Contig62.g500 RNA methyltransferase RlmN 0.03 OrthoFinder
Sro414_g138300.1 Contig453.g6105 Probable dual-specificity RNA methyltransferase RlmN 0.04 OrthoFinder
XM_002503982.1 MICPUN_60237, 60237 Radical SAM [Interproscan]. 0.03 OrthoFinder
XM_002504959.1 MICPUN_86756, 86756 Radical SAM [Interproscan]. 0.11 OrthoFinder
XM_003054875.1 MicpuC2_10773, 10773 Hypothetical protein 0.05 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33242.1_3456 PRW33242 Ribosomal RNA large subunit methyltransferase N isoform A 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001932 regulation of protein phosphorylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019220 regulation of phosphate metabolic process IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0019900 kinase binding IEP Enrichment
MF GO:0019901 protein kinase binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031399 regulation of protein modification process IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042325 regulation of phosphorylation IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043549 regulation of kinase activity IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0045859 regulation of protein kinase activity IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051174 regulation of phosphorus metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051338 regulation of transferase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 285 456
No external refs found!