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  5. lcl|VRMN01000002.1_cds_KAA8496322.1_51

lcl|VRMN01000002.1_cds_KAA8496322.1_51 (KAA8496322)


Aliases : KAA8496322

Description : Transposable element Tc3 transposase


Gene families : OG_01_0000753 (OrthoFinder) Phylogenetic Tree(s): OG0000753_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496322.1_51
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497478.1_6431 KAA8497478 Tc3 transposase, DNA binding domain [Interproscan]. 0.13 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497536.1_6489 KAA8497536 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497567.1_6520 KAA8497567 Transposable element Tc3 transposase 0.25 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497597.1_6550 KAA8497597 Transposable element Tc3 transposase 0.19 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498132.1_7085 KAA8498132 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499803.1_8756 KAA8499803 Transposable element Tc3 transposase 0.13 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499908.1_8861 KAA8499908 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496284.1_13 KAA8496284 Transposable element Tc3 transposase 0.21 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495849.1_1847 KAA8495849 Transposable element Tc3 transposase 0.15 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494982.1_3512 KAA8494982 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495120.1_3650 KAA8495120 Hypothetical protein 0.13 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493477.1_4239 KAA8493477 Transposable element Tc3 transposase 0.07 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493666.1_4428 KAA8493666 Transposable element Tc3 transposase 0.07 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493884.1_4646 KAA8493884 Transposable element Tc3 transposase 0.21 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493390.1_9691 KAA8493390 Transposable element Tc3 transposase 0.13 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492868.1_2604 KAA8492868 Transposable element Tc3 transposase 0.17 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492085.1_5268 KAA8492085 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492124.1_5307 KAA8492124 Transposable element Tc3 transposase 0.15 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491613.1_5081 KAA8491613 Transposable element Tc3 transposase 0.13 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491365.1_2366 KAA8491365 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491239.1_5867 KAA8491239 Tc3 transposase, DNA binding domain [Interproscan]. 0.12 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491240.1_5868 KAA8491240 Transposable element Tc3 transposase 0.19 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490752.1_6008 KAA8490752 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490780.1_6036 KAA8490780 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490539.1_5905 KAA8490539 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000036.1_cds_KAA8490274.1_5944 KAA8490274 Transposable element Tc3 transposase 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 16 64
No external refs found!