lcl|VRMN01000002.1_cds_KAA8496314.1_43 (KAA8496314)


Aliases : KAA8496314

Description : Transposable element Tc3 transposase


Gene families : OG_01_0003235 (OrthoFinder) Phylogenetic Tree(s): OG0003235_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000002.1_cds_KAA8496314.1_43
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499722.1_8675 KAA8499722 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493093.1_2829 KAA8493093 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491638.1_5106 KAA8491638 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491651.1_5119 KAA8491651 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490931.1_6134 KAA8490931 Transposable element Tc3 transposase 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006313 transposition, DNA-mediated IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 150 269
IPR002492 Transposase_Tc1-like 42 106
No external refs found!